If you fail to notify us your files will beĪutomatically deleted from the server after two weeks. You must notify us after uploading your files. The web interface only displays accessioned submissions. Location for processing and assigning of accessions.įiles deposited on the FTP site are not displayed under 'My Submissions' on the web interface. Files will be moved by curators to an internal The FTP server is a temporary storage space.
Please use passive & binary modes when transferring files. tdf, etc).įor high-throughput sequencing submissions, we recommend providing the MD5 checksums for theįiles that you are uploading (details below). Use only alphanumerals ,ĭo not use gz- or bzip2-compression on binary files (.BigWig. DO NOT USE ZIP!įile names should NOT include any sensitive information (these will appear publicly).įile names should be unique (DO NOT upload subdirectories containing identically-named files).Īvoid whitespace and special characters in file names. Your upload should include three components: (1) raw data files, (2) processed data files,įiles can be compressed using gzip or bzip2, and may be submitted in a tar archive but archivingĪnd/or compressing your files is not required. Do not proceed to Step 3 (below) until your transfer has completed. Notify us (Step 3) and list the meaningfully-named folder in your notification. Please see below for detailed examples.Īfter connecting, you must navigate to your personalized upload space:Īfter navigating to your personalized upload space, transfer the meaningfully-named submission folder from your computer to our server. Please see below for detailed examples and other options.įor LINUX/UNIX users, we recommend transferring files with 'ncftp' or 'lftp', but you can also use 'ftp', 'sftp', or 'ncftpput'. Please do not proceed with an upload larger than 1 terabyte until you hear back from GEO.įor PC/Mac OS users we recommend transferring files with the free third-party software, FileZilla Client. ChIPseq, RNAseq, RRBS, etc) it is OK to organize the files for each data type into its own subfolderĬonfirm the size of your folder and contact us if your submission exceeds 1 terabyte in size. If your submission is comprised of several datasets geo_submission_march13)Īnd place all of your submission files into the folder.
Therefore, please initiate transfer only once you have gathered all required files.Ĭreate a new folder on your computer that has a meaningful name (e.g. We do not have resources to store partial submissions. The upload area has limited space capacity, (raw data files, processed data files and metadata spreadsheet). Raw file-only submissions should be made directly to SRA.ĭo not begin transferring files until you have gathered and are ready to upload all required components GEO is a repository requiring both raw *and* processed data for submissions (see requirements here).
0 kommentar(er)
